PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0050s0163.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 211aa MW: 23599.7 Da PI: 8.7116

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0163.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.2e-29	131	189	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+ ++prsYY Ct ++C+vkk+++r ++dp +v++tYeg Hnh+ Kaladp0050s0163.1.p 131 LDDGYKWRKYGQKAVKNCNYPRSYYHCTRHTCNVKKQIQRLSKDPGIVVTTYEGIHNHP 189 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-31	118	189	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-26	123	190	IPR003657	WRKY domain
PROSITE profile	PS50811	27.554	126	191	IPR003657	WRKY domain
SMART	SM00774	2.2E-32	131	190	IPR003657	WRKY domain
Pfam	PF03106	4.3E-23	132	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEGDQWPPPL TPMINQDPSS SFLYSTNGSI PATSSMSNGL LHPLSSQMMG DPEIDWVNLL 60 SQAGCSTSSS TATNNHQDLF LPPSSSSLRL IGGEDQGRNK SLDDVRKVGR KVKKVVPPRV 120 AFHTRSQDDI LDDGYKWRKY GQKAVKNCNY PRSYYHCTRH TCNVKKQIQR LSKDPGIVVT 180 TYEGIHNHPC EQFMETLSPL LNQIQFLTKF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	121	188	7	74	Probable WRKY transcription factor 4
2lex_A	1e-23	121	188	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444939.1	7e-63	probable WRKY transcription factor 43
Refseq	XP_006491470.1	7e-63	probable WRKY transcription factor 43
TrEMBL	V4VXQ8	2e-61	V4VXQ8_9ROSI; Uncharacterized protein
STRING	XP_006491470.1	3e-62	(Citrus sinensis)
STRING	XP_006444939.1	3e-62	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	3e-52	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	Kaladp0050s0163.1.p