PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0164.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 329aa    MW: 36059.3 Da    PI: 6.5683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29151209259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs +prsYYrC+s+ gC ++k+ve+s+ dp++++itY+ +Hnh+
  Kaladp0050s0164.1.p 151 TDLWAWRKYGQKPIKGSFYPRSYYRCSSSkGCAARKQVEQSSLDPNIFTITYTADHNHP 209
                          699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-30136211IPR003657WRKY domain
SuperFamilySSF1182909.15E-25145211IPR003657WRKY domain
PROSITE profilePS5081130.285145211IPR003657WRKY domain
SMARTSM007743.6E-34150210IPR003657WRKY domain
PfamPF031062.2E-24152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIMDDNWGLH AVVNGCTQQA QQWNNAVDIQ EELLFHMGQN HHQLPDLPFD LISSPMSFDL  60
HELEDIYKLP FGDGLASGVM LASGSNPKLA VDMQQHHQQY EVFGGSSSSA YHLPGDNGTA  120
FIAAAAASNR AKRKNQQKRV VQHVTANGLS TDLWAWRKYG QKPIKGSFYP RSYYRCSSSK  180
GCAARKQVEQ SSLDPNIFTI TYTADHNHPH PTRRSSLSGV SKNKKASSAP PNKKPTPPPP  240
PPTSSLPLKD SSSSNSPTML NMSAPTTPLM VENTSREDGI KEECSTVAVE DGSMMDLGCL  300
GFEEEIGEMG FDGYQSWFPH WLDGRSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-191522121880Disease resistance protein RRS1
5w3x_D1e-191522121880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FLX84e-46WRK27_ARATH; Probable WRKY transcription factor 27
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-42WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]