PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0280.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 303aa    MW: 33789 Da    PI: 6.5052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13112158354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+Er+RR+riNs + +Lr+llP+      +K +Ka+ L +++++ k+L
  Kaladp0050s0280.1.p 112 RNHSEAERKRRERINSHLTKLRSLLPNT-----TKTDKASLLAEVIQCAKHL 158
                          78*************************9.....8************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.834109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-12112161No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13113167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.07E-5195251No hitNo description
CDDcd048736.49E-5195242No hitNo description
Gene3DG3DSA:3.30.70.2603.5E-5195251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMEDNDVYGS QTFHHNHLLF HQHQQQDITI MQPPFSSSSS FDPAYNPFLI PPPPSFSHSC  60
TYTPDHYMSS NLSTNDHGAL GSSSLLGSML SQEFEKMRSM DMMEAKALAA SRNHSEAERK  120
RRERINSHLT KLRSLLPNTT KTDKASLLAE VIQCAKHLKQ QTSALSELHT VPTEADDLTF  180
ETCATRDGQL LIKASLCCED RSDVLQDLIS TFQALNLKIV KADMTTFGGR MKYVVFIVGD  240
SDQTCGQIED AADQPFVVTI QEAFRDVMGR SLGKLDNKGP SSDYGFKRRR VKGECQRSLD  300
AN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122ERKRRE
2286290KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224425.16e-68PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_017224426.16e-68PREDICTED: transcription factor bHLH30 isoform X1
SwissprotQ9S7Y12e-52BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A175YGM91e-66A0A175YGM9_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]