PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0304.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 224aa    MW: 24223.5 Da    PI: 9.3772
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0304.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294105197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC l+p +     p++q +++ +++k++G++ ++++l+a+++++r ++++sl+yeA+ r+ dPvyGavg++++ ++
  Kaladp0050s0304.1.p   4 SCNGCRVLRKGCPDDCSLRPGLswittPEAQGNATVFLAKFYGRAGLMNFLNATSDHHRAEIFKSLLYEACGRIVDPVYGAVGLLWSNNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                            +++++e++l 
  Kaladp0050s0304.1.p  94 SHCEAAVEAVLS 105
                          ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5023109IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKTSCNGCRV LRKGCPDDCS LRPGLSWITT PEAQGNATVF LAKFYGRAGL MNFLNATSDH  60
HRAEIFKSLL YEACGRIVDP VYGAVGLLWS NNWSHCEAAV EAVLSGGRIL PIQNPRDHAG  120
HPIAALNSFD IRHVARPAPH EPDVAPRFTI RTKRRSPRFP KKVVRANWTE LGGPSDGSGF  180
SVETVEGSVA NRVRPNQQQG SDDKSETGLE LSLNLGPGKL KAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282602.13e-71PREDICTED: LOB domain-containing protein 40
TrEMBLA0A438ED377e-70A0A438ED37_VITVI; LOB domain-containing protein 41
TrEMBLF6HEW87e-70F6HEW8_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03540.t011e-70(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-58LOB domain-containing protein 42