PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0052s0013.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 240aa MW: 27960.4 Da PI: 10.2605

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0052s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.8	3.3e-26	124	173	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le+++kyF++pi+ AAk+++v+lTvLK++CR ++I+RWPhRkiksl Kaladp0052s0013.1.p 124 STLELEEIQKYFDMPITLAAKKMNVGLTVLKKRCRDLNIMRWPHRKIKSL 173 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	107	194	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-22	125	173	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKREPLSPKL NSYPSNVAAP IADRYNADHH CMVFDPSTQY QTWKNGPKLE YDPHTSHDAH 60 FYLSEDEMTY LNQLFKTDPV EPLECTGRKL GNVSADGTMR RDMKEARKPQ AGTRKRVSRF 120 TKSSTLELEE IQKYFDMPIT LAAKKMNVGL TVLKKRCRDL NIMRWPHRKI KSLKSLISNV 180 KELGLEKEIQ MLEEHRMTVE KMPHVELTEK TKKLRQACFK ANYKKRRQVQ ASRCFSLIK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021297552.1	1e-55	protein RKD4
TrEMBL	A0A2G9G3C3	2e-53	A0A2G9G3C3_9LAMI; Uncharacterized protein
STRING	EOY23580	1e-53	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kaladp0052s0013.1.p