PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0311.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 148aa    MW: 16492.1 Da    PI: 8.7766
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0311.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55.2e-202761135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWRrgp g+k+LCnaCG++ rkk++
  Kaladp0053s0311.2.p 27 CVDCGTSKTPLWRRGPAGPKSLCNACGIRSRKKRR 61
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.7E-142178IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-132261No hitNo description
Gene3DG3DSA:3.30.50.109.4E-172561IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.96E-142761No hitNo description
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
PfamPF003208.7E-182761IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.3232757IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MLAEEQMCDS TDDQGLDCKE VSLKKLCVDC GTSKTPLWRR GPAGPKSLCN ACGIRSRKKR  60
RALLGLAKSD EKKKEKDKKK SKHMMNNINI INERKNRSSC CCSSSNCYSD SMFMCDILKP  120
PNVRIEELNE EQQAAVLLMA LSHGFNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691171.11e-30PREDICTED: GATA transcription factor 15-like
TrEMBLA0A1U8JLL63e-29A0A1U8JLL6_GOSHI; GATA transcription factor 15-like
STRINGGorai.005G065300.12e-29(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.14e-21GATA family protein