PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0453.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 263aa    MW: 29168.1 Da    PI: 9.366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0453.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-054971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C++ F r  nL+ H r+H
  Kaladp0053s0453.2.p 49 HICEICNQGFQRDQNLQMHRRRH 71
                         68********************9 PP
2zf-C2H217.98.8e-06126148123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k +  +s++k H++t+
  Kaladp0053s0453.2.p 126 WVCGKCSKAYAVQSDYKAHLKTC 148
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-54971No hitNo description
Gene3DG3DSA:3.30.160.608.2E-54971IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0334971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0764971IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003559990120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4117147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-5121146No hitNo description
SMARTSM0035587126153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLGKSRGAEN PFSSSLHEPT PCLENKDVSN STSSKRKRRP AGTPESDQHI CEICNQGFQR  60
DQNLQMHRRR HKVPWKLLKR ENPGQRKRVY VCPEPSCLHH NPSHALGDLV GIKKHFKRKH  120
SNLKEWVCGK CSKAYAVQSD YKAHLKTCGT RGHSCDCGRI FSKVESFIEH QDTCQVSCLM  180
SDKHIPSTKQ TILLSGTASS SGSASVHIPD HGAAPWLQAG SITEIGMIMK GNKDKIAADV  240
IGNGEYHNLE LQLSTTSTWY GQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-17124176557Zinc finger protein JACKDAW
5b3h_F9e-17124176557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926994.12e-98protein SHOOT GRAVITROPISM 5-like isoform X2
SwissprotF4IPE36e-89IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A068TRJ79e-97A0A068TRJ7_COFCA; Uncharacterized protein
STRINGPOPTR_0012s03730.13e-96(Populus trichocarpa)
STRINGXP_002534293.12e-96(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.12e-89C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]