PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0053s0581.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 201aa MW: 22362 Da PI: 6.7928

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0053s0581.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	142	197	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k Kaladp0053s0581.2.p 142 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 197 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-20	128	197	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-22	130	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.633	139	199	IPR001356	Homeobox domain
SMART	SM00389	4.5E-15	140	200	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-19	142	197	IPR001356	Homeobox domain
CDD	cd00086	1.10E-19	142	197	No hit	No description
PROSITE pattern	PS00027	0	174	197	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MYGDCQVVLS SMGMNNSNAG SSSSSSNLNL TSMNMNMGMG MGMFSSDSAA ANYFSSPPSN 60 NIQSGSSFNF MSPSTLLMPP LPFHSSYPPL NILTPEESDQ LKGKLDEMES GSGSDQIEAL 120 SANDALDTNN NTDQNQQPQP KKKRYHRHTA HQIQEMEAVF KECPHPDDKQ RMRLSQELGL 180 KPRQIKFWFQ NRRTQMKVFH *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277673.1	5e-47	PREDICTED: homeobox-leucine zipper protein ROC3
Refseq	XP_010663098.1	5e-47	PREDICTED: homeobox-leucine zipper protein ROC3
Refseq	XP_010663102.1	5e-47	PREDICTED: homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	7e-35	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A438GPS7	1e-45	A0A438GPS7_VITVI; Homeobox-leucine zipper protein ROC3
TrEMBL	A5AJ70	1e-45	A5AJ70_VITVI; Uncharacterized protein
STRING	VIT_02s0012g02030.t01	2e-46	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	2e-29	homeobox-7

Link Out ? help Back to Top
Phytozome	Kaladp0053s0581.2.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]