PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0058.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 139aa    MW: 15340.6 Da    PI: 10.5369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.7e-151865249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          i++ s+r vt++kRr+g++KK e L +L++ ++a i+fs+ g+ y++
  Kaladp0055s0058.1.p 18 AIQDMSRRRVTLTKRRQGLFKKMEKLRTLTGCKAAAIVFSTAGRPYTF 65
                         6999******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-17968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.035969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-161072IPR002100Transcription factor, MADS-box
CDDcd001202.42E-191066No hitNo description
PRINTSPR004041.2E-121131IPR002100Transcription factor, MADS-box
PfamPF003193.3E-171965IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-123146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-124667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MQKQARMGTG RKRIQIQAIQ DMSRRRVTLT KRRQGLFKKM EKLRTLTGCK AAAIVFSTAG  60
RPYTFGDLSL FDSFTCAGQG DGVSTTSFDC NVSEDLDGLN SEMTSLLEMR RKVIQKLNQQ  120
QVDGGFDGNV LPPQPLGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-16AGAMOUS-like 29