PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0055s0290.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 834aa MW: 96501.9 Da PI: 8.8839

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0055s0290.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.3e-26	81	166	1	87
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fYn+YA + GF +r++ ++ks++ +ei++ +fvC+keg+++++k++ k +++ trtgCkak+++ ++ +++w+v+k+e eHnH Kaladp0055s0290.1.p 81 DFYNHYALNHGFGIRVNGHTKSRTIKEIIRWQFVCNKEGFKSKDKRQMGKDVKSHRGTRTGCKAKMEIALR-NDEWVVDKFEDEHNH 166 6********************************************************************.9************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-23	81	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-34	291	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.803	610	647	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-4	622	649	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:4.10.60.10	9.6E-4	790	810	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 834 aa Download sequence Send to blast
MESSSGSSLI FCDRNNIHAL DGGANHNQKS VQDDSVFEID DQNDECEFKW AAEDNIFLSN 60 TREGGTLILG RLFASKDEAY DFYNHYALNH GFGIRVNGHT KSRTIKEIIR WQFVCNKEGF 120 KSKDKRQMGK DVKSHRGTRT GCKAKMEIAL RNDEWVVDKF EDEHNHIPTT PSKVMKHRSH 180 NKFHRTPIVR NLVYELNQKG LKPAAITKVV NAMSGSHKGD ITSKQCTDLL RKEKKNHVGR 240 ECYGIIKHFH EKTKSDGSHY FAMDLAPDGS LRSVFWADGR SRSAYAQFGD VLVFDVTYRT 300 NHFKLPFAPL VGVNHHRQSI LFGAALLEDE TEETFAWLFE QFLKCMFEKP PLTIITDQDG 360 AMKKAIKRIF PHTRHRFCAW HINKHVIEHL HSFCVRFDDF EETYTKWQKR NTIEEFELDW 420 EIIKQKYSIG KGSWLENMYN QRYYWVKVYL NDCFTAGMTT SGRSESMNSY FDGYVNSNTM 480 LNDFVKQYDK AVEARRIKEE EEDFYSMESH AVLLTSYPIG KALPNLPSNG LDCSSYIVHS 540 LSMQSTPFAK KKTSYPIEEQ VARLYTRNLF EIFKLEWRKS FDCIHQKSNK GINFVEYLVG 600 KHGVDVKHWR TVNYESCGEL SVKCACCKFE MEGILCKHIL YIVRKKYLEV IPDRYFLPRW 660 TITARYKDNN MVKNSSTRYE QDEIVAPPLT LWSIQRKFNT ALEVSRKSPS DLQLLESLLD 720 SYIDNVGNKK LIDNVGEDVE TQNNPNTPLV FVNDQCLMTI RDPASLAKNK GRPPLSTRFE 780 SGLELAAKAK RQKTCRTCQK KGHNSSSCAM RKHPTMVDMR LGVAKQRLMR EVV*

Sequence ? help Back to Top

Protein Sequence Length: 834 aa Download sequence Send to blast

MESSSGSSLI FCDRNNIHAL DGGANHNQKS VQDDSVFEID DQNDECEFKW AAEDNIFLSN  60
TREGGTLILG RLFASKDEAY DFYNHYALNH GFGIRVNGHT KSRTIKEIIR WQFVCNKEGF  120
KSKDKRQMGK DVKSHRGTRT GCKAKMEIAL RNDEWVVDKF EDEHNHIPTT PSKVMKHRSH  180
NKFHRTPIVR NLVYELNQKG LKPAAITKVV NAMSGSHKGD ITSKQCTDLL RKEKKNHVGR  240
ECYGIIKHFH EKTKSDGSHY FAMDLAPDGS LRSVFWADGR SRSAYAQFGD VLVFDVTYRT  300
NHFKLPFAPL VGVNHHRQSI LFGAALLEDE TEETFAWLFE QFLKCMFEKP PLTIITDQDG  360
AMKKAIKRIF PHTRHRFCAW HINKHVIEHL HSFCVRFDDF EETYTKWQKR NTIEEFELDW  420
EIIKQKYSIG KGSWLENMYN QRYYWVKVYL NDCFTAGMTT SGRSESMNSY FDGYVNSNTM  480
LNDFVKQYDK AVEARRIKEE EEDFYSMESH AVLLTSYPIG KALPNLPSNG LDCSSYIVHS  540
LSMQSTPFAK KKTSYPIEEQ VARLYTRNLF EIFKLEWRKS FDCIHQKSNK GINFVEYLVG  600
KHGVDVKHWR TVNYESCGEL SVKCACCKFE MEGILCKHIL YIVRKKYLEV IPDRYFLPRW  660
TITARYKDNN MVKNSSTRYE QDEIVAPPLT LWSIQRKFNT ALEVSRKSPS DLQLLESLLD  720
SYIDNVGNKK LIDNVGEDVE TQNNPNTPLV FVNDQCLMTI RDPASLAKNK GRPPLSTRFE  780
SGLELAAKAK RQKTCRTCQK KGHNSSSCAM RKHPTMVDMR LGVAKQRLMR EVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0055s0290.1.p