PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0346.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 323aa    MW: 35785.6 Da    PI: 4.85
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.21.8e-19141199259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++W+K Gq   k+s++ rsY++C+++ +C ++k v++++e p+ +++tY+g H h+
  Kaladp0055s0346.1.p 141 EDVWAWKKNGQNFTKDSPYLRSYFKCSTSdECFARKVVQQTSEVPEKFIVTYTGLHVHP 199
                          8*************************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-20130201IPR003657WRKY domain
PROSITE profilePS5081121.735135201IPR003657WRKY domain
SuperFamilySSF1182905.62E-18138201IPR003657WRKY domain
SMARTSM007741.6E-17140200IPR003657WRKY domain
PfamPF031067.8E-17141199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDNFKYDVHA QIGSSSGSSN FSPGESCPFS VSDPTSFFLN VETEIPFSYP ELDSIFDPQD  60
DDQFHVFPPP VMKPFTTPTP SSAITTTTAT TAVVAPSPRP KVKKSKARSL SFEEIYKRKL  120
KKKSSKKISS VHEVGDGKQI EDVWAWKKNG QNFTKDSPYL RSYFKCSTSD ECFARKVVQQ  180
TSEVPEKFIV TYTGLHVHPP PNTENPIRGC YKPLRAKRSM EGGGGSNNAS SSSSTMTNQT  240
YDNAALTPIS SDHYHSSANT TFSEMMMMFS SEGEVTEEAR DGEVEELGED LFLHDDVNGD  300
ASLGDDEFFE GIEELHKKFF CD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.15e-19WRKY family protein