PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0055s0347.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 322aa MW: 35554 Da PI: 4.4826

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0055s0347.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.4	8.1e-20	139	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++W+K Gq k+s+f rsY++C+++ +C ++k v++++e p+ +++tY+g H h+ Kaladp0055s0347.1.p 139 EDVWAWKKNGQNFTKDSPFLRSYFKCSTSeECFARKAVQQTSEVPEKFIVTYTGLHVHP 197 8***********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-20	128	199	IPR003657	WRKY domain
PROSITE profile	PS50811	21.815	133	199	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-18	136	199	IPR003657	WRKY domain
SMART	SM00774	7.5E-18	138	198	IPR003657	WRKY domain
Pfam	PF03106	3.4E-17	139	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDNFNYDVHA QIGSSSSSKF SPGESCPFSV SDPTSFFLNV ETEVPFSYPE LDSIFDPQDA 60 ADQFDVFAPP IMKPCTTPSS DITTTTAATA VAAPSPCPKV EKSKARSPSF EEIYKQKLKK 120 KSSKKISSVH EVGDGKQIED VWAWKKNGQN FTKDSPFLRS YFKCSTSEEC FARKAVQQTS 180 EVPEKFIVTY TGLHVHPPPN TENPIRGCYK PLRAKRSMEG GGSSNNNASS SSSTMTNHQT 240 NDNFALTPVS SDYHHSSANT TFSEMMMYSS EGEVTEETRD DEVEELGEDL FLHDDVSGDA 300 SLGDEEFFDG IEELHTKYFC D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	5e-19	WRKY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0055s0347.1.p