PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0349.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 320aa    MW: 34373.8 Da    PI: 9.577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-1260104147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Kaladp0055s0349.1.p  60 RQSWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104
                          899*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-1654110IPR009057Homeodomain-like
PROSITE profilePS5129414.02355109IPR017930Myb domain
TIGRFAMsTIGR015576.0E-1858107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-658110IPR009057Homeodomain-like
SMARTSM007179.9E-1059107IPR001005SANT/Myb domain
PfamPF002492.6E-1060104IPR001005SANT/Myb domain
CDDcd001671.33E-762105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVSKSSNPPD AFYLDPTGAA LPGLSPFAPT GGGGAIGVAS AAGEDGDKKV RKPYTITKSR  60
QSWTEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK SGGNEHLPPP  120
RPKRKAAHPY PHKASKSVPA LPELRGALLS SASASSLPHP GYVLKHDVHS IPSDPSSRAA  180
VASSWTDSSA QASAIPNASQ GDLKSTAEAM AINSSNSAES NLRVQSVSRT PVQANKSQAI  240
RVLPDFAQVY GFIGSVFDPN VSGHLQNLKQ MDPIDVETVL LLMRNLSINL TSPAFEDHRK  300
ILSTYEFDPK EPSYDVIGI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019454354.11e-131PREDICTED: protein REVEILLE 6-like isoform X2
SwissprotQ8H0W31e-105RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A061G0F61e-127A0A061G0F6_THECC; Homeodomain-like superfamily protein isoform 1
STRINGEOY233251e-128(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-88MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]