PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0056s0096.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 277aa MW: 29297.9 Da PI: 8.5743

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0056s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	106	126	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C+ C+k+F++ L H Kaladp0056s0096.1.p 106 YECKTCSKTFPSFQALGGHRA 126 99*********9888877765 PP
2	zf-C2H2	13.5	0.00022	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H Kaladp0056s0096.1.p 180 HRCSVCGSEFSSGQALGGHMRRH 202 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.62E-8	105	128	No hit	No description
SMART	SM00355	0.29	106	128	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.138	106	133	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.9E-10	106	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.62E-8	175	202	No hit	No description
Pfam	PF13912	1.6E-11	179	204	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	180	202	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.702	180	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	202	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKQSKLLSKN RASLQTRNTL IIAMELPVDE VAAASLVPGA LQNISKGKRN KRSSGIASDE 60 EEDRRSYDSV VTEEEQDLAN CLILLARAEV VVGAKRRIAD VMGGCYECKT CSKTFPSFQA 120 LGGHRAGHGK PKSHIDDCDF APSSSSNCSV SPQPPTPPTT AANRNDVVVA KSSTRPSKAH 180 RCSVCGSEFS SGQALGGHMR RHRAVPVPSR SPSAGPSSMG SGGASSLEAK TRSFLSLDLN 240 LPAPEVGEIS QCQQNAAFHQ LETHAFSTHA LLGCHY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-30	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0056s0096.1.p