PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0056s0125.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 179aa    MW: 19700.5 Da    PI: 10.425
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0056s0125.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.77.5e-1511103895
                NF-YB   8 lPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                          lP + v r++k+ l   +      + kda     e +  fi ++++ a+d c++ +r+ +n++d+l al ++ f ++v+plk+ l  yre
  Kaladp0056s0125.2.p  11 LPKTIVRRVVKEKLSDLSddgpvMVHKDAVLAFSEAARVFIHYLSATANDICKESRRQIVNAEDVLKALEEIEFPEFVDPLKASLDVYRE 100
                          7777788888887764331112257899999*********************************************************** PP

                NF-YB  93 leg 95 
                          +++
  Kaladp0056s0125.2.p 101 IHT 103
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-309143IPR009072Histone-fold
PfamPF008085.5E-101079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.06E-2510121IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDELTVDVEQ LPKTIVRRVV KEKLSDLSDD GPVMVHKDAV LAFSEAARVF IHYLSATAND  60
ICKESRRQIV NAEDVLKALE EIEFPEFVDP LKASLDVYRE IHTGKREATT PKENESKKKS  120
KISASETASR SKKATNASNT KNNKSAKKKV LNGTKSNSKN KKAVNGTPST STKKAKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A6e-131112718130DNA polymerase epsilon subunit D
5y27_A6e-131112718130DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031521.11e-53PREDICTED: DNA polymerase epsilon subunit D
TrEMBLA0A059A9S32e-52A0A059A9S3_EUCGR; Uncharacterized protein
STRINGXP_010031521.14e-53(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-38nuclear factor Y, subunit B11