PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0057s0086.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 303aa    MW: 31182.7 Da    PI: 6.5201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0057s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-057698123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC++C+k Fs++  L  H++ H
  Kaladp0057s0086.1.p 76 HKCKYCPKEFSTSQALGGHQNAH 98
                         79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-672103No hitNo description
Gene3DG3DSA:3.30.160.602.2E-474102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-67599IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.90776103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAEKVRSRN KGKEDAEEGE ADKNKNSGGG GGGGLSLALV IAPQQAAGES SGAGSERMRS  60
RRRREEDVAA TTRRVHKCKY CPKEFSTSQA LGGHQNAHKP ERVADKFKES LGKIGAIRRE  120
PNASHRYQPY YANNSDNVAG GLNFAGVGGF SSGHPLYQLP HSSLLAAGLG GGGHVVPVQM  180
GAPAPRFGGQ GFAQRVRSWS EFLRRPNAAS GESSSSGRTG GGGSDGRRLS YLPGGIGFGP  240
NANPNGHANP DPNGNPDANV NPDNADGSNA DGEAEADADA ADPGDGDAEA DGEGELDLTL  300
RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-09C2H2 family protein