PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0057s0093.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 289aa    MW: 31983.6 Da    PI: 9.8722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0057s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.64.9e-162263243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i n+s r+ t+ kR+ g++KK +ELS+LC+++++ +i+s+ 
  Kaladp0057s0093.1.p 22 FITNDSARKATYKKRKRGLIKKVNELSTLCGVDACAVIYSPY 63
                         89**************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-231372IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-241398IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.4421361IPR002100Transcription factor, MADS-box
CDDcd002662.77E-331498No hitNo description
PRINTSPR004042.1E-71535IPR002100Transcription factor, MADS-box
PfamPF003191.4E-172263IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-73550IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSASRITSSP STMTRQKVKL AFITNDSARK ATYKKRKRGL IKKVNELSTL CGVDACAVIY  60
SPYETQPEVW PPSAVGVQRV LAQFRRMPEM EQSKKMVNQE TFLRQRIVKT KEQLKKQLKD  120
NREKEVTEVM FQCLTGKGMA NLNMMDLNDL AWLIDQYMRE INNRCEKLKK SEVATGLQAS  180
GAGGAEDLVE EDTKPLILDH VSHPSMMNNS GVHHAAAGDG RQGSAWLPGG FVSNNNGASS  240
SSSSNKNNHL QLQVLPGIMA GTDMILAPPQ VNMGGMWPHQ NPNFYNNM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382260.22e-83agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-64AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU31e-80A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGPOPTR_0005s00420.12e-81(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-67AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]