PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0057s0098.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 404aa    MW: 44803.4 Da    PI: 7.4147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0057s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Kaladp0057s0098.1.p 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding45.51.8e-1467110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+ l++d+++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Kaladp0057s0098.1.p  67 RGAFSPQEETLIIDLHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.006965IPR017930Myb domain
SuperFamilySSF466892.32E-2912108IPR009057Homeodomain-like
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001672.95E-121761No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2565116IPR009057Homeodomain-like
SMARTSM007173.4E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.86266116IPR017930Myb domain
PfamPF002494.0E-1367111IPR001005SANT/Myb domain
CDDcd001678.31E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SPQEETLIID LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPDTHKPLS SDPVKASLDT HPTGKQQQNS LFDAENKQQS NTREFFLDRF VVSANTETAS  180
STVTVAAASA GCKPAADVLG YFSFQQLSNN HSYHGSSAEH DSSNTLCFNP NDHQFSSNPV  240
PSMFSSISSS FLTAPTATAT LPCSNSNSNN SSSIGSYSMN HNASVQNWDS HSFSWGPSDC  300
GKSNKDDQQQ QQLDGGENED CKWSEYLQTT APFLLAGTSY PNLHAMCHST DIIKPETHCH  360
ESNNSTTASP ASLLWHHQQQ QSLSDAYSKQ DFHRLAVAFE PSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276091.11e-117PREDICTED: transcription factor MYB86
TrEMBLA0A438GYK11e-115A0A438GYK1_VITVI; Transcription factor MYB61
TrEMBLA5C8P81e-115A5C8P8_VITVI; Uncharacterized protein
TrEMBLF6I4I71e-115F6I4I7_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00240.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-88myb domain protein 55