PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0013.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 106aa    MW: 12062.8 Da    PI: 7.1431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-1422961497
                         T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         + + +p  f+ ++ +g k ++ +  l++ + g+ W vk+  ++++   +l+ GW+eF+  ++L +gDfvvF+++g+  f   v+vf
  Kaladp0058s0013.1.p 22 KDFLIPTAFF-KYlNGRK-CE-QALLRSsRGGEPWPVKI--NGRR---ILE-GWEEFAAHHHLHVGDFVVFRYEGDLVF--DVTVF 96
                         4589******.5646554.43.4666663777*******..7776...455.*********************997666..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-196101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-187105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252999IPR003340B3 DNA binding domain
CDDcd100171.66E-141096No hitNo description
SMARTSM010193.3E-81299IPR003340B3 DNA binding domain
PfamPF023621.3E-102189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MVDTKAPEKP HLLQPVLPGH TKDFLIPTAF FKYLNGRKCE QALLRSSRGG EPWPVKINGR  60
RILEGWEEFA AHHHLHVGDF VVFRYEGDLV FDVTVFGPNS CEKEY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670204.11e-36putative B3 domain-containing protein REM15 isoform X1
SwissprotP0DH859e-26REM10_ARATH; B3 domain-containing protein REM10
TrEMBLB9RNP91e-34B9RNP9_RICCO; Uncharacterized protein
STRINGXP_002515368.12e-35(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-28B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]