PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0058s0028.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 369aa MW: 42689.8 Da PI: 8.2424

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0058s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.8	1.4e-07	45	114	4	89
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 n+YA+++GFs+r+ ++ ++ g+++ ekk +++ +r+ tr gC ++ + +++g++ v + e eHnH + Kaladp0058s0028.1.p 45 NDYARKIGFSIRRGNKDIM----------LK----GNKNAEKKC--NRSYSRNITRSGCPTFIQFSIDRNGRYTVRHHEMEHNHVF 114 7899999999999975554..........22....333333333..35568999******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-5	45	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-22	216	298	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MADEVNLSSF KRPGYGNCKL TVESEAPELI GLVVESDEAA YALSNDYARK IGFSIRRGNK 60 DIMLKGNKNA EKKCNRSYSR NITRSGCPTF IQFSIDRNGR YTVRHHEMEH NHVFSDIRER 120 HLMRSQRFIS DEQIELLKSF RKCGIKLSNA IRFLKCQYGG SPNIGFINID AYSALGNLDC 180 KTFNGSDANE DGHLCGFYWR DGIMKKDYDL FGDLLIHDTT YQTNKYDMIC GPFVGMNHHT 240 NNVMFGCGFI TNKRVESFVW LFQLFLKSMG DKAPITIMTD ESAAMAAGIN KVFPHKQTQI 300 ERIIALRKKD EFVHLFNNLL KGCDYEAEFN FYWQRMITVY NCADNHWIIK FYKTKEQWCE 360 TFCKELFL*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MADEVNLSSF KRPGYGNCKL TVESEAPELI GLVVESDEAA YALSNDYARK IGFSIRRGNK  60
DIMLKGNKNA EKKCNRSYSR NITRSGCPTF IQFSIDRNGR YTVRHHEMEH NHVFSDIRER  120
HLMRSQRFIS DEQIELLKSF RKCGIKLSNA IRFLKCQYGG SPNIGFINID AYSALGNLDC  180
KTFNGSDANE DGHLCGFYWR DGIMKKDYDL FGDLLIHDTT YQTNKYDMIC GPFVGMNHHT  240
NNVMFGCGFI TNKRVESFVW LFQLFLKSMG DKAPITIMTD ESAAMAAGIN KVFPHKQTQI  300
ERIIALRKKD EFVHLFNNLL KGCDYEAEFN FYWQRMITVY NCADNHWIIK FYKTKEQWCE  360
TFCKELFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166533.1	1e-112	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019195042.1	1e-113	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010673996.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-47	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0058s0028.1.p