PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0031.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 281aa    MW: 31109 Da    PI: 6.8852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023101123123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kaladp0058s0031.1.p 101 FSCNYCQRKFYSSQALGGHQNAH 123
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-698128No hitNo description
PROSITE profilePS5015711.427101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MYSLMEEPSP SETSSIISTT DGITPPQVLL QKTPYPGLIV CVEDYDNEDH RERKSAIQLD  60
LYNSGNTSNQ ELNLIDNLDM ESMHTSSMTP QPPDGAEPRV FSCNYCQRKF YSSQALGGHQ  120
NAHKRERTIA KRGQRLGASM MAAATAFGHA YLQPHHHLPS MSALPIHGAY NRSLGIQVHS  180
MIQKPAYSQN TMLSGHPYGH RNWTRQPIEQ QPAVGKLSME IINQTSGVTG SISKFHTPKF  240
ETVNTDLPTD HIISGCWWPG GGISKPDQED LQKLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282938.13e-89PREDICTED: zinc finger protein 3-like
TrEMBLF6H3J57e-88F6H3J5_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05930.t011e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-52C2H2 family protein