PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0292.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 213aa    MW: 24009.3 Da    PI: 5.0415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-1811103190
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+l +sdv+ ++r++lpkk ae+h   ++ +e++ l+++d +g  +W++k+++  ++ s++yv++ +  +Fv a+gL++gD ++ +ld
  Kaladp0058s0292.1.p  11 FQKILQNSDVNYLRRIILPKKAAEAHlpALQIKEGIPLKIYDADGrHTWTFKYRFwpNNASRMYVFE-NAGDFVAAHGLQAGDCFIMYLD 99 
                          99**************************555557788*****999789*****99888888889999.9*****************9986 PP

                          SSSEE CS
                   B3  86 grsef 90 
                             ++
  Kaladp0058s0292.1.p 100 I-GTQ 103
                          3.334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-248120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-21999IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-259111No hitNo description
PfamPF023627.2E-1511107IPR003340B3 DNA binding domain
PROSITE profilePS508639.62911113IPR003340B3 DNA binding domain
SMARTSM010192.1E-1611113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
DIDRTKLRFL FQKILQNSDV NYLRRIILPK KAAEAHLPAL QIKEGIPLKI YDADGRHTWT  60
FKYRFWPNNA SRMYVFENAG DFVAAHGLQA GDCFIMYLDI GTQNLVIEAK KSGDTKVIAA  120
EPEVKPLPMP SSAFVPDYIM NPPALEVANP PSDIFVDFPP LDHSVGKLLY DTSSFCNESP  180
LDFLGGLATQ RPSNHYFQDN LVDDLPFDDF HF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-5071181112B3 domain-containing transcription factor FUS3
6j9b_D6e-5071181112B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446963.14e-59B3 domain-containing transcription factor FUS3
TrEMBLV4TII31e-57V4TII3_9ROSI; Uncharacterized protein
STRINGXP_006446963.12e-58(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.19e-55B3 family protein