PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0552.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 341aa    MW: 37147.5 Da    PI: 6.5079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0552.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192474256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         +y GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Kaladp0058s0552.1.p 24 KYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDEAARSLRGA 74
                         8********.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-302481IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-202481IPR016177DNA-binding domain
CDDcd000187.48E-312481No hitNo description
SMARTSM003804.3E-362487IPR001471AP2/ERF domain
PfamPF008471.2E-132473IPR001471AP2/ERF domain
PROSITE profilePS5103220.9162481IPR001471AP2/ERF domain
PRINTSPR003673.3E-82536IPR001471AP2/ERF domain
PRINTSPR003673.3E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGVPSQPTII KSAKKKASSR GHHKYVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEDA  60
ARAYDEAARS LRGANARTNF ELPPQMKNGR GGFLRPLTEW AEPFSFELEC GTSDDARGGL  120
IAALKAKLLD GKGADGAVSL PHMSGSSRIK ANHDTGLLRK HVDGPKMRQQ TTDRIAQSII  180
INPNPPTPVQ DSCLLKFSKS DMPIDHDDHD DLIASAAAQW ADQANHTAQL ENVVWPLADP  240
WNNTQMTMSH FHQEESLFLS HSNGNSSGSS AGWPLAVTTD TSAQFSYHNQ CDPVELAPSV  300
IDAACIWPEQ QFAQSENNNA WGCSASGSFD QLLYLSSMLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1622891280Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-18related to AP2 11