PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0059s0023.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 338aa MW: 37448.8 Da PI: 9.9686

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0059s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.9	9.6e-12	12	55	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++en s+r vt+skRr+g++KK e + ++ +v ++fs gk Kaladp0059s0023.1.p 12 KVENISRRRVTLSKRRQGLFKKMEKFGIVTGFDVTAVVFSVAGK 55 689*************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.96E-13	3	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.493	3	59	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-13	3	62	IPR002100	Transcription factor, MADS-box
CDD	cd00120	5.49E-14	4	60	No hit	No description
PRINTS	PR00404	6.9E-10	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-13	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-10	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-10	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGTGRKKINI EKVENISRRR VTLSKRRQGL FKKMEKFGIV TGFDVTAVVF SVAGKPMMFG 60 DIIVFQRFMT EVLGSGGDFE FDEETAGNTR LGFEKLGEEV KECLHCKTLV MIRNKLIELK 120 DKLKGVLSDE ETEARAKQSS LSLLKALRDT EKKKLDFLEK SLKEITTLCD VDALFVCATK 180 SNKSSESSFY TYPDDKHTVR KLIIKCCDYF RKPIIVDKVL PHSIVCGKPM SDIAAKNPVS 240 RIAVSAEKRP TPQSTVTAEK LMSPSISTAE KVLAATSSKS ELVKKANSII KLSNLKLAML 300 KEAKVANEEH GMHRAGSTEA EVLEGSSGKL LPYIKFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	4e-14	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Kaladp0059s0023.1.p