PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0082.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 277aa    MW: 30584.1 Da    PI: 8.1821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13103155155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          r++ah e+Er RR+++ + ++ Lr++lP        +K s ++   +A +YIk+Lq
  Kaladp0059s0082.1.p 103 RKEAHREIERLRRQEMSNLYSSLRSHLPDeY---IRGKRSISDHMNEAANYIKHLQ 155
                          799**************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-10100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14100171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.018102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-13102156No hitNo description
PfamPF000104.2E-10103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-5108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MFPFQRGDEL FQIPHTTHPD NNHIIHHQHQ NQPADGYQDH HHRIIFMGHD RDDLIPASSS  60
TARDAAGSAR GVRGGGRRKS PLLAASASPA GGCGDAQIGS DRRKEAHREI ERLRRQEMSN  120
LYSSLRSHLP DEYIRGKRSI SDHMNEAANY IKHLQQRSKE LRVKRDELKK GDTSATTLEP  180
CSSSSARSCA VQVNACWGGV EIVIASGFRD PSPPMPISRV LRALQGDGFS VYSCVSAAVN  240
DSVFHTIQAQ VGDDTCLDLP RLQEKLFDVV SSSWRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-39bHLH family protein