PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0088.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 171aa    MW: 19823.4 Da    PI: 8.9379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-102671346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +l+  a + + ++   +W+++a++++ g++ k++++ +  
  Kaladp0059s0088.1.p 26 YWTREENKLFESALAIYDKNtpdRWEKVAQMIP-GKSVKDVINQYKE 71
                         6********************************.*********9975 PP
2Myb_DNA-binding31.24.9e-10124158236
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                          ++WT++E+ +++ +  ++G+g+W++I+r +   +t
  Kaladp0059s0088.1.p 124 LPWTEDEHRRFLMGLLKHGKGDWRSISRNFVASKT 158
                          69**************************9875555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-61672IPR009057Homeodomain-like
PROSITE profilePS5129310.5562275IPR017884SANT domain
SMARTSM007176.6E-112375IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-142581IPR009057Homeodomain-like
PfamPF002499.0E-92671IPR001005SANT/Myb domain
CDDcd001672.61E-92772No hitNo description
PROSITE profilePS512949.669118170IPR017930Myb domain
TIGRFAMsTIGR015571.1E-7121161IPR006447Myb domain, plants
SMARTSM007170.18122168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-8124161IPR009057Homeodomain-like
CDDcd001673.43E-6125161No hitNo description
PfamPF002492.8E-7125161IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-8125163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MIMDTMYQTF QLQNSNCLPQ KSHSSYWTRE ENKLFESALA IYDKNTPDRW EKVAQMIPGK  60
SVKDVINQYK ELEDDVINIE AGLVPTPGYL TSSFTLELGD DRDFDVLRKK SRARSADREK  120
KKGLPWTEDE HRRFLMGLLK HGKGDWRSIS RNFVASKTPT QSYSEQNRLI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-17271021186RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107121RKKSRARSADREKKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021295548.17e-75transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H72e-59DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2N9H1W52e-75A0A2N9H1W5_FAGSY; Uncharacterized protein
STRINGXP_008233716.11e-73(Prunus mume)
STRINGEMJ204611e-73(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]