PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0110.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 564aa    MW: 61316.8 Da    PI: 6.9815
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.4e-17183269186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea+ ++  +l++g+l++ +Weev+  +re+     +s +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Kaladp0059s0110.1.p 183 EWSDTAIGCLLEAYMSKYAQLNKGNLRGRDWEEVAGMVREGCQkqAKSVEQCKNKVDNLKKRYKLERHRMSSG-GVSTSHWPWFQKME 269
                          5**********************************998765442256999**********************9.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-19181271No hitNo description
SMARTSM005950.0051191276IPR006578MADF domain
Gene3DG3DSA:3.40.1160.103.7E-64306556IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.361321557IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-49322556IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.33E-94324557No hitNo description
PfamPF006963.7E-20325536IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MLNQTPSSFL FLHLTPSSSP NETLTVTSPT PLSMASCDDD FPLLPDDRHH HHHQQQQSHP  60
QFQHQGFYRL NRFINKVATA PTARSPIRGG RDEGSERFAD LSFTAKCASA FPDVAPFSGD  120
EEASPFAEEA GEEEEAANQS SGRKEREEVI DGTALYKRSK IGEGSGSGSA APGGGDYRRD  180
REEWSDTAIG CLLEAYMSKY AQLNKGNLRG RDWEEVAGMV REGCQKQAKS VEQCKNKVDN  240
LKKRYKLERH RMSSGGVSTS HWPWFQKMEE IFGDLVPRNT ADLEEDKAVQ SSSRQAKRYS  300
VATANPVSPL LNVRMKQAPR LRWRRVVFKI SGVALAGTGS GSNNFDPEVA RLIASEVAKA  360
SRAGVEVAIV VGGRNLFCGD TWVTATGSDR STAYQIGMMA TVMNSILLQS AMEKMGIQAR  420
VQSGLIVQES AEPYNRQRAI RHLEKGRIVI FGGVGVGIGN PLFSTDTAAA LRASEIHAEA  480
VLKGANADGL YGCNSGNNNI FEHISFRALG SGGANFMDMM ALSYCEENSI PVVVFNLLEP  540
GNISKAICGE QVGTLIDQTG RIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A8e-523215567239Uridylate kinase
3ek5_B8e-523215567239Uridylate kinase
3ek5_C8e-523215567239Uridylate kinase
3ek5_D8e-523215567239Uridylate kinase
3ek5_E8e-523215567239Uridylate kinase
3ek5_F8e-523215567239Uridylate kinase
3ek6_A8e-523215567239Uridylate kinase
3ek6_B8e-523215567239Uridylate kinase
3ek6_C8e-523215567239Uridylate kinase
3ek6_D8e-523215567239Uridylate kinase
3ek6_E8e-523215567239Uridylate kinase
3ek6_F8e-523215567239Uridylate kinase
3nwy_A3e-5132355650279Uridylate kinase
3nwy_B3e-5132355650279Uridylate kinase
3nwy_C3e-5132355650279Uridylate kinase
3nwy_D3e-5132355650279Uridylate kinase
3nwy_E3e-5132355650279Uridylate kinase
3nwy_F3e-5132355650279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277826.10.0PREDICTED: uncharacterized protein LOC100264768 isoform X2
TrEMBLF6HKF70.0F6HKF7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-173Trihelix family protein