PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0221.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 629aa    MW: 69784.7 Da    PI: 6.3786
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.82e-3073157187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++lk+plW++vs+km e g++rs+k+Ckek+en+ k++k++keg++++   + +t+++fdqlea
  Kaladp0059s0221.1.p  73 RWPRQETLALLKIRSDMDVAFRDSNLKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKEGRSSK--SDGKTYRFFDQLEA 157
                          8********************************************************************97..45567*******85 PP
2trihelix92.54.2e-29431515186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +L+++r++ e +++++  k+p Wee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpy++ l+
  Kaladp0059s0221.1.p 431 RWPKAEVETLVKLRTSFEIKYQENGPKGPFWEEISAGMRSLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYYHLLD 515
                          8********************************************************************98.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.91166130IPR017877Myb-like domain
SMARTSM007171.6E-470132IPR001005SANT/Myb domain
PfamPF138378.7E-2072158No hitNo description
CDDcd122031.63E-2472137No hitNo description
PROSITE profilePS500907.34424488IPR017877Myb-like domain
SMARTSM007170.0038428490IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-4428487IPR009057Homeodomain-like
PfamPF138372.8E-20430516No hitNo description
CDDcd122032.51E-25430495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MMLGGGGGGD GASMLVSSAG GGGDNTASNN NNSSVGGVVV FGEDQEIHNS TSGNNNMMMM  60
MEDGDRNNSG GNRWPRQETL ALLKIRSDMD VAFRDSNLKG PLWDDVSRKM GELGYHRSAK  120
KCKEKFENVY KYHKRTKEGR SSKSDGKTYR FFDQLEALDQ LQPFQMPPPP VQQPPQVSHS  180
KAPPFLMQPP PALQTPTTIS FSQHQPCTNN VTNSNPITTT APITPVPTNP TIISPNYQSG  240
ATTFMVSTSS STSSDDLQQR RRTGKKRKWR DFFEKLMRDV VDKQEELQNK FLRSIEMRER  300
ERSMREEAWR MEEMARLNRE HEVLVQERAA AAAKDAAVIA FLQKIAGQQP QTQSQPQPQL  360
QALPPQPKQQ PPQPPHTIQL NPSTTPPPPQ RQPPPQQPQP LNVMRPDSNA AGAKNNLAIV  420
CGSNQPASSS RWPKAEVETL VKLRTSFEIK YQENGPKGPF WEEISAGMRS LGYNRNAKRC  480
KEKWENINKY FKKVKESNKQ RPEDSKTCPY YHLLDTIYKE KKGGGGGGGN INSYLPPHST  540
NSLMAPPLMV QPEQQWPLAP QAQARHQNEQ GEDQDDMLDE DELDEDMEDE EEEGDEEDNN  600
GGTYEVVATA SNGAPPAATG SLGTTAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258267QRRRTGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-165trihelix transcription factor GT-2-like
TrEMBLA0A3Q7JB431e-165A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-165(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-52Trihelix family protein