PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0221.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 607aa    MW: 67279 Da    PI: 6.6886
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0221.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-13871353787
             trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          km e g++rs+k+Ckek+en+ k++k++keg++++   + +t+++fdqlea
  Kaladp0059s0221.2.p  87 KMGELGYHRSAKKCKEKFENVYKYHKRTKEGRSSK--SDGKTYRFFDQLEA 135
                          899******************************97..45567*******85 PP
2trihelix92.64e-29409493186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +L+++r++ e +++++  k+p Wee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpy++ l+
  Kaladp0059s0221.2.p 409 RWPKAEVETLVKLRTSFEIKYQENGPKGPFWEEISAGMRSLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYYHLLD 493
                          8********************************************************************98.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173270110IPR001005SANT/Myb domain
PfamPF138375.0E-886136No hitNo description
PROSITE profilePS500907.34402466IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-4406465IPR009057Homeodomain-like
SMARTSM007170.0038406468IPR001005SANT/Myb domain
PfamPF138372.6E-20408494No hitNo description
CDDcd122032.39E-25408473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MMLGGGGGGD GASMLVSSAG GGGDNTASNN NNSSVGGVVV FGEDQEIHNS TSGNNNMMMM  60
MEDGDRNNSG GNRWPRQETL ALLKIRKMGE LGYHRSAKKC KEKFENVYKY HKRTKEGRSS  120
KSDGKTYRFF DQLEALDQLQ PFQMPPPPVQ QPPQVSHSKA PPFLMQPPPA LQTPTTISFS  180
QHQPCTNNVT NSNPITTTAP ITPVPTNPTI ISPNYQSGAT TFMVSTSSST SSDDLQQRRR  240
TGKKRKWRDF FEKLMRDVVD KQEELQNKFL RSIEMRERER SMREEAWRME EMARLNREHE  300
VLVQERAAAA AKDAAVIAFL QKIAGQQPQT QSQPQPQLQA LPPQPKQQPP QPPHTIQLNP  360
STTPPPPQRQ PPPQQPQPLN VMRPDSNAAG AKNNLAIVCG SNQPASSSRW PKAEVETLVK  420
LRTSFEIKYQ ENGPKGPFWE EISAGMRSLG YNRNAKRCKE KWENINKYFK KVKESNKQRP  480
EDSKTCPYYH LLDTIYKEKK GGGGGGGNIN SYLPPHSTNS LMAPPLMVQP EQQWPLAPQA  540
QARHQNEQGE DQDDMLDEDE LDEDMEDEEE EGDEEDNNGG TYEVVATASN GAPPAATGSL  600
GTTAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236245QRRRTGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-146trihelix transcription factor GT-2-like
TrEMBLA0A3Q7JB431e-146A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-146(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-52Trihelix family protein