PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0317.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 407aa    MW: 44501 Da    PI: 7.0115
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0317.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06344439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         r+C+ ++e++   +C++++ +lC +C  + H+       H++
  Kaladp0059s0317.1.p  3 RMCDFCGEQRSMVYCRSDSACLCLSCDRNVHSAnalsnrHSR 44
                         68*****************************65677777765 PP
2zf-B_box25.43e-084689441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+++ +++++  C+d +  lC++C  ++H +      H++++
  Kaladp0059s0317.1.p 46 LLCERCMSQPAIVRCHDESASLCQNCDWSGHGNasvtstHQRQT 89
                         57*****************************6688888888766 PP
3CCT63.56.4e-22349392144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k+RkF+KkirY+sRK++A+ R+RvKGrFvk+ 
  Kaladp0059s0317.1.p 349 RDNAVRRYKEKKKHRKFDKKIRYASRKERADVRKRVKGRFVKAG 392
                          899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.769147IPR000315B-box-type zinc finger
CDDcd000213.36E-8347No hitNo description
PROSITE profilePS501199.3434390IPR000315B-box-type zinc finger
CDDcd000217.67E-74790No hitNo description
SMARTSM003360.164890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.289349391IPR010402CCT domain
PfamPF062031.1E-16349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGRMCDFCGE QRSMVYCRSD SACLCLSCDR NVHSANALSN RHSRTLLCER CMSQPAIVRC  60
HDESASLCQN CDWSGHGNAS VTSTHQRQTI NCYSGCPSAA ELSRIWSFVL DMASTGALDG  120
EKGAGSVAET CAGLTNLERK SSASLADASR IVELESKSAV LMPSSTMGAP KSTTLFKELP  180
TPPKQCCSIT EDIQLFDDDD NLFGDFSMAD ADLNLESYEE LFGYSQNFSE HLFENGGMAS  240
LFPERYIPEV GTSRQGPKAA KGPAAVRTNT MQPSCSNPMS VDSVVSCKTD PVAYPTRKDN  300
SGVTLSFSGM TNESSNGEYQ DCGVSPMVAI GEPPWCPPGL ENSLTSASRD NAVRRYKEKK  360
KHRKFDKKIR YASRKERADV RKRVKGRFVK AGEKYDYDPM CPTRSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360369KHRKFDKKIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245014.11e-157PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-130COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1U7Z2X71e-156A0A1U7Z2X7_NELNU; zinc finger protein CONSTANS-LIKE 9
STRINGXP_010245014.11e-156(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-116B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]