PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0034.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 188aa MW: 20394.6 Da PI: 10.9328

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	234.6	7.7e-72	17	187	139	301
GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..........skaekksidlvlngvslDestlPvPvCsCtGa 218 +++ + +++k+ k+ ++kkp+++ +k +kk +++s k+ ++ s+ + k+ + +l+ln+ lD+ +lPvP CsCtG+ Kaladp0060s0034.1.p 17 TTKARKGKRAKEAKTVSPKKPLKPARKIAKKGTRASSKQLTATSQ--HssddgtsgnlDKQIVLKGGLSLNELGLDDVNLPVPFCSCTGK 104 222333333344444555555555555555544444444433333..034667766666666667799******************** PP GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++ CYkWG GGWqSaCCtt++S+yPLP+++++r++R++grKmS+gaf+kl+ +La+eGyd+ p+DLk+hWAkHGtn+++ ir Kaladp0060s0034.1.p 105 PQSCYKWGKGGWQSACCTTALSMYPLPQMPNKRHSRMGGRKMSGGAFTKLITRLASEGYDITVPIDLKNHWAKHGTNRYIIIR 187 *******************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.9E-45	1	187	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.7E-70	6	187	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MRISFDVFPQ SSAASKTTKA RKGKRAKEAK TVSPKKPLKP ARKIAKKGTR ASSKQLTATS 60 QHSSDDGTSG NLDKQIVLKG GLSLNELGLD DVNLPVPFCS CTGKPQSCYK WGKGGWQSAC 120 CTTALSMYPL PQMPNKRHSR MGGRKMSGGA FTKLITRLAS EGYDITVPID LKNHWAKHGT 180 NRYIIIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022144218.1	1e-64	protein BASIC PENTACYSTEINE6
Refseq	XP_022144219.1	1e-64	protein BASIC PENTACYSTEINE6
Refseq	XP_022144220.1	1e-64	protein BASIC PENTACYSTEINE6
Swissprot	Q5VSA8	5e-60	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A0D2MA32	7e-63	A0A0D2MA32_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KKL4	4e-63	A0A1U8KKL4_GOSHI; protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBL	A0A2G5EN89	8e-63	A0A2G5EN89_AQUCA; Uncharacterized protein
STRING	Aquca_006_00158.1	1e-63	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-55	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Kaladp0060s0034.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]