PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0038.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 180aa    MW: 19736.3 Da    PI: 6.6025
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         +C+ +e   ++lfC  ++  lC++C ++ H
  Kaladp0060s0038.1.p  4 ICDVCEGAAAILFCAADEAALCQSCDDKVH 33
                         8******99******************998 PP
2zf-B_box28.53.3e-095492438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                          +C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Kaladp0060s0038.1.p 54 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHE 92
                         69**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.968147IPR000315B-box-type zinc finger
CDDcd000212.90E-6447No hitNo description
PfamPF006432.7E-6442IPR000315B-box-type zinc finger
SuperFamilySSF578457.55E-54990No hitNo description
SMARTSM003365.1E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.4855196IPR000315B-box-type zinc finger
PfamPF006431.2E-75492IPR000315B-box-type zinc finger
CDDcd000212.24E-75593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRSICDVCEG AAAILFCAAD EAALCQSCDD KVHMCNKLAS RHVRVRLAAP SAVARCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HERYLILRQK VEFQGDKPGL LEDPASQPLE  120
TGESNEGPKN STRDNQQNHV SSPVPIIDSN GDSHVKRDTK MIDLNMKPQR IHKQASNNQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922129.11e-96B-box zinc finger protein 18-like
SwissprotC0SVM53e-72BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1Q3C7349e-95A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein
TrEMBLA0A1R3GG331e-94A0A1R3GG33_COCAP; Zinc finger, B-box
STRINGVIT_04s0023g03030.t013e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-74DBB family protein