PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0097.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 473aa MW: 50206.5 Da PI: 8.6945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0097.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kaladp0060s0097.1.p 57 FVCEICSKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	13.2	0.00027	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Kaladp0060s0097.1.p 133 WKCEKCSKKYAVQSDWKAHAKIC 155 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	56	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.6E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	98	128	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-4	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-6	128	153	No hit	No description
SMART	SM00355	140	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MAASGASGGD ASVSSSGEQP AVKLAAVKKK RNLPGMPDPD AEVIALSPKT LMATNRFVCE 60 ICSKGFQRDQ NLQLHRRGHN LPWKLRQRTS KDVKKRVYVC PETSCVHHDP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HAKICGTREY KCDCGTLFCR RDSFITHRAF 180 CDALAEESAK ATETQAPKLN RKSLHLTDDP KNQNAAANGS SQPAPTSDDV LSEAADSGVR 240 ITEEEQPSEV AAGLTGSCNV SSNSSPSSAM FASLLASSST DLFRTVAHPH GHVAPDFAPQ 300 ASTEPVSLCL SHNQGLASSF GAAGQEHRQY APLPQAAMSA TALLQKAAQM GSSASSASLL 360 RGLGVTASSP SSTRQQETFP WSRRQMEQEG RSIQAGLCLG LPTNGSPGFK DMMLGHSSMF 420 SPKQATLDLL GLGMAASGNP NGGISALLTS LGGNLDVDAP FRNGDIAEKD IR*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MAASGASGGD ASVSSSGEQP AVKLAAVKKK RNLPGMPDPD AEVIALSPKT LMATNRFVCE  60
ICSKGFQRDQ NLQLHRRGHN LPWKLRQRTS KDVKKRVYVC PETSCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HAKICGTREY KCDCGTLFCR RDSFITHRAF  180
CDALAEESAK ATETQAPKLN RKSLHLTDDP KNQNAAANGS SQPAPTSDDV LSEAADSGVR  240
ITEEEQPSEV AAGLTGSCNV SSNSSPSSAM FASLLASSST DLFRTVAHPH GHVAPDFAPQ  300
ASTEPVSLCL SHNQGLASSF GAAGQEHRQY APLPQAAMSA TALLQKAAQM GSSASSASLL  360
RGLGVTASSP SSTRQQETFP WSRRQMEQEG RSIQAGLCLG LPTNGSPGFK DMMLGHSSMF  420
SPKQATLDLL GLGMAASGNP NGGISALLTS LGGNLDVDAP FRNGDIAEKD IR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	129	190	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	129	190	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457504.1	0.0	protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-156	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1Q3BNB2	0.0	A0A1Q3BNB2_CEPFO; Zf-C2H2_jaz domain-containing protein
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)
STRING	POPTR_0005s12710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Kaladp0060s0097.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]