PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0101.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25177.6 Da    PI: 5.9149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1978129556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++t++q  +Le +Fe++ ++ +e++e +A++l+L+ rqV vWFqNrRa++k
  Kaladp0060s0101.1.p  78 RKLTDYQAVQLELCFESEAKLETERKETIAAELELEPRQVAVWFQNRRARWK 129
                          5899***********************************************9 PP
2HD-ZIP_I/II103.41.9e-3377166392
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          kr+l++ q+ +LE +Fe+e kLe+erK+++a eL+l+prqvavWFqnrRAR+k k+lE +++ L+++++ + +++++Le++v+eL  +l 
  Kaladp0060s0101.1.p  77 KRKLTDYQAVQLELCFESEAKLETERKETIAAELELEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHQCVLAQKAQLEAQVSELSGRLV 166
                          9************************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-1755131IPR009057Homeodomain-like
SMARTSM003892.1E-1274135IPR001356Homeobox domain
SuperFamilySSF466898.13E-1677131IPR009057Homeodomain-like
PROSITE profilePS5007114.64177131IPR001356Homeobox domain
CDDcd000868.88E-1377129No hitNo description
PfamPF000461.5E-1678129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMTSNMVTMP VNGGHNFPVQ GGDDQLMMFL SSQQQKCLFD PVTLGPKTED QPGKAVKKQR  60
KRKPKNRGGE NGAGYGKRKL TDYQAVQLEL CFESEAKLET ERKETIAAEL ELEPRQVAVW  120
FQNRRARWKC KKLEDEFANL RTSHQCVLAQ KAQLEAQVSE LSGRLVEAES ELQRLSARCE  180
SGISVENSST PGSSLSMEGV QLLENGYAQV MDDYWMSNLY EMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15966RKRKPKNR
26078KRKPKNRGGENGAGYGKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602292.12e-39homeobox-leucine zipper protein ATHB-40-like
TrEMBLA0A199UBK85e-38A0A199UBK8_MANES; Uncharacterized protein
STRINGcassava4.1_026937m9e-39(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.15e-37homeobox protein 21