PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0330.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 153aa    MW: 17484 Da    PI: 9.5021
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.17.9e-2020109290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHel 89 
                          f  eY+ ++GF+ r+ + ++s+++g   ++ fvC+kegkr e+++   +++r+raetrt+Ck k+ +++e    gk++++ l+leHnH l
  Kaladp0060s0330.1.p  20 FLTEYGATTGFTPRRFYCHTSRKDGLPSNAVFVCNKEGKRGENSDL-MTKKRERAETRTSCKVKFGIHREPsaFGKYRIYMLHLEHNHLL 108
                          6689**************************************9998.99********************998889*************98 PP

                 FAR1  90 a 90 
                           
  Kaladp0060s0330.1.p 109 H 109
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1520108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGMIPKLGMD FDSVEDAWVF LTEYGATTGF TPRRFYCHTS RKDGLPSNAV FVCNKEGKRG  60
ENSDLMTKKR ERAETRTSCK VKFGIHREPS AFGKYRIYML HLEHNHLLHT RATIHMMPSQ  120
HHITEIQANE IELADASGIQ VKRSHEFMSK KA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein