PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0433.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 416aa    MW: 46520.2 Da    PI: 5.4293
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0433.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.79.9e-26308392186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W ++e++aLi++r  +e ++++  +k + W+evs+++   g++rs+k+Ckekwen+nk+++++k++ + +  +ss+tcpyf++l+
  Kaladp0060s0433.1.p 308 KWLRDEIQALIQLRGGLEMNFSSMGSKCTIWDEVSARLLGMGYRRSAKKCKEKWENMNKYFRRVKTNGITK-RNSSKTCPYFQELD 392
                          7*****************************************************************99986.88999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073301365IPR017877Myb-like domain
SMARTSM007170.004305367IPR001005SANT/Myb domain
CDDcd122032.55E-23307372No hitNo description
PfamPF138379.6E-20307392No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEVFSGEVRM RASDHFPDQI SPFPSSFDSL FAGSEVTVPS PDITPFPPQK LRPIRCNGKS  60
AADCATDPAV SAFGEFRVAS GQGSLGAGFG EVGFVSDFRN EYVEGAGSVG AGCVGGGGVR  120
PVADARIGKD EFEGQSLPPD SRSESEVSGE LLEHAQGSNN RKSRGRKGKR WEGLMQKLIS  180
KVLVKQEAMH KQIMEAIERN ERERLMREEA WKQQQMEWMR RDEQMRAEET SRNVALISFI  240
QNVIDQDFQL PEPLQMYNLP NDEGEVDHQR DIVCDGTDDR LHTSEKDDFP GTKYPPPQEI  300
SLSADNRKWL RDEIQALIQL RGGLEMNFSS MGSKCTIWDE VSARLLGMGY RRSAKKCKEK  360
WENMNKYFRR VKTNGITKRN SSKTCPYFQE LDILCKQGII SPPCNPSDTN CGDLS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-35Trihelix family protein