PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0471.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 378aa    MW: 42488.9 Da    PI: 7.0173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-1866113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT eEd  l  +++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Kaladp0060s0471.1.p  66 RGPWTVEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 113
                          89********************************************97 PP
2Myb_DNA-binding513.4e-16119162146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kaladp0060s0471.1.p 119 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 162
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.38861117IPR017930Myb domain
SuperFamilySSF466893.11E-3163160IPR009057Homeodomain-like
SMARTSM007176.9E-1465115IPR001005SANT/Myb domain
PfamPF002498.4E-1766113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2367120IPR009057Homeodomain-like
CDDcd001673.85E-1168113No hitNo description
SMARTSM007171.3E-14118166IPR001005SANT/Myb domain
PROSITE profilePS5129418.707118168IPR017930Myb domain
PfamPF002496.9E-15119162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-22121167IPR009057Homeodomain-like
CDDcd001671.49E-7139162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGYMNGRSV AAEKQQQYYS NMSSLVGGGG VAMSSNSNNQ NHHKVQSSSS GEEEEDEMGM  60
MMDLRRGPWT VEEDHTLMSY IAKHGEGRWN SLARCAGLKR TGKSCRLRWL NYLRPDVRRG  120
NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF  180
KDTMRYLWMP RLVERIQAAA AANGASSPRN PLNHTLPNLT APIHHHHHHN LIIPPTTAPS  240
HHFTSSSYVC SDNSSTTAAS SDSFGAQVSP ASDMAEDYQM PGSCYNLNNN VDYFTGSNNG  300
GQICYSDSLI SPAGYYHPQA ADFPSMEQHS SNNQNSSGLI SNNLNQWLVE GGDLSDNMWN  360
VEDIWLLQQQ QLNNNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25631664106B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115735.11e-126transcription factor MYB108-like
SwissprotQ9FGY34e-88MYB78_ARATH; Transcription factor MYB78
TrEMBLB9HX621e-124B9HX62_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-125(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-81myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]