PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0493.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 412aa MW: 45960 Da PI: 4.905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0493.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	242	284	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N++++ Lr+++Pk + K++ +iL ++eY+k+L Kaladp0060s0493.1.p 242 LAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIEYMKEL 284 58*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	235	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	239	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	241	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-14	242	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	242	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-5	249	289	No hit	No description
CDD	cd04873	7.91E-4	337	400	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEISEEDFLQ ELLALRRSSQ TSSWDSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS 60 NNNSSFQITS SSSSPWDPPM DPQTFSTNHP PPFDQAFHNP TPRFPSSQHH HPQLCSSAEH 120 HPHMMEEDET ASLFLVQHDG GGLYYNPFSG FEDHHYHQAD LASSLLDEDQ SAMMMMMMMQ 180 SDTQSLKIEP SAAATPSSDL LAVPSHVFNV GCGGSDFSER KSGGGGGKAS KKVQGQPSKN 240 LLAERRRRKR LNDRLSLLRS IVPKISKMDR TSILGDTIEY MKELLERIQS LQDELDLDHH 300 SDDQVFLVDL FQDLKPNEVQ IRNTPKFEVE RRNPKDTRVE ICCSGKPGLL LSTVNTMEAL 360 GLEIEQCVIS CFNDFAMHAS CSEDVDTGNE TDCEEIKQAL FRNAGYGGQC L*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEISEEDFLQ ELLALRRSSQ TSSWDSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS  60
NNNSSFQITS SSSSPWDPPM DPQTFSTNHP PPFDQAFHNP TPRFPSSQHH HPQLCSSAEH  120
HPHMMEEDET ASLFLVQHDG GGLYYNPFSG FEDHHYHQAD LASSLLDEDQ SAMMMMMMMQ  180
SDTQSLKIEP SAAATPSSDL LAVPSHVFNV GCGGSDFSER KSGGGGGKAS KKVQGQPSKN  240
LLAERRRRKR LNDRLSLLRS IVPKISKMDR TSILGDTIEY MKELLERIQS LQDELDLDHH  300
SDDQVFLVDL FQDLKPNEVQ IRNTPKFEVE RRNPKDTRVE ICCSGKPGLL LSTVNTMEAL  360
GLEIEQCVIS CFNDFAMHAS CSEDVDTGNE TDCEEIKQAL FRNAGYGGQC L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	250	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LSL1	9e-75	BH093_ARATH; Transcription factor bHLH93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-63	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Kaladp0060s0493.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]