PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0061s0003.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 798aa MW: 92850.8 Da PI: 9.3337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0061s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	1e-22	115	201	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFs+r++k+++++ + + t+r+fvCskeg+++ +k++ k++ +r+ trtgC+a ++ + +++g++ v++ e eH+H+++ Kaladp0061s0003.1.p 115 LYNDYARRIGFSIRRAKQRYRRGESSLTMRQFVCSKEGTKNAKKES--KRSYSRNITRTGCQAFIQFSIDQEGRYTVQRHEMEHTHDFS 201 6**************************************99988..9999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	115	201	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-30	324	417	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence Send to blast
MDVTRFNIQG SSFYYMPIED CRLTCANTLS LFRIQRCERS YQQLRKSMYK IKTNPNPQKL 60 ISQHLQHSML ELDTRFKNNE LHDRWRKQVR AKFFEAKNSE LIGLVVESEE DAYALYNDYA 120 RRIGFSIRRA KQRYRRGESS LTMRQFVCSK EGTKNAKKES KRSYSRNITR TGCQAFIQFS 180 IDQEGRYTVQ RHEMEHTHDF SDIRQRHLMR SQRSISDEQI ELLKSFRKCG IKLSDAIRFL 240 KCQFGGSPNI GFINIDAYNA LANPDCKTFN GSDAKNLIEI FKERQENEDD FFYNFDLDED 300 GRLCGFFWRD GIMKKDYNLF GDLVVHDTTY RTNKYDMVCG PFVGMNQHTN NVMFGCGFII 360 NERVESFVWL FQSFLKSMGD KAPITIMTDE SAAMAAGIKK VFPTSKHRLC IWHIIKNSKE 420 RIISLRKKDG FIHLFNHLLK GCDSEAEFNF YWQRMITVYN CADNPLIIKF YKTKEKWCGA 480 FCKDFFSGGI LSSQRSETTN KSVSRRLNKL SGLCEFYYTF CDVVSEWRSN EMKFNYSNSN 540 GIPEMVVSNS NLLRHARDVY TRNIYKIFED RFLDGISCTQ MILPSEPNVF CYNVWREGID 600 MFRHYIRFSA ETLLRIPDAY ILKRWRKDIR KDCQESDQSL CTASGSSFWR IDMVQKFSSL 660 ISYCESSNER KKICEGLLKR GRDLAGYQCI SEQGYGGMNS DNIEIRNPAG SRVVGERNVR 720 KKSIRENKTN IARGNYKKSA KEAILKGKMV FQHSVEENVI SMVGSGFFGH PLSGGSNLVR 780 NSSDSENTVT AHLDLNK*

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence Send to blast

MDVTRFNIQG SSFYYMPIED CRLTCANTLS LFRIQRCERS YQQLRKSMYK IKTNPNPQKL  60
ISQHLQHSML ELDTRFKNNE LHDRWRKQVR AKFFEAKNSE LIGLVVESEE DAYALYNDYA  120
RRIGFSIRRA KQRYRRGESS LTMRQFVCSK EGTKNAKKES KRSYSRNITR TGCQAFIQFS  180
IDQEGRYTVQ RHEMEHTHDF SDIRQRHLMR SQRSISDEQI ELLKSFRKCG IKLSDAIRFL  240
KCQFGGSPNI GFINIDAYNA LANPDCKTFN GSDAKNLIEI FKERQENEDD FFYNFDLDED  300
GRLCGFFWRD GIMKKDYNLF GDLVVHDTTY RTNKYDMVCG PFVGMNQHTN NVMFGCGFII  360
NERVESFVWL FQSFLKSMGD KAPITIMTDE SAAMAAGIKK VFPTSKHRLC IWHIIKNSKE  420
RIISLRKKDG FIHLFNHLLK GCDSEAEFNF YWQRMITVYN CADNPLIIKF YKTKEKWCGA  480
FCKDFFSGGI LSSQRSETTN KSVSRRLNKL SGLCEFYYTF CDVVSEWRSN EMKFNYSNSN  540
GIPEMVVSNS NLLRHARDVY TRNIYKIFED RFLDGISCTQ MILPSEPNVF CYNVWREGID  600
MFRHYIRFSA ETLLRIPDAY ILKRWRKDIR KDCQESDQSL CTASGSSFWR IDMVQKFSSL  660
ISYCESSNER KKICEGLLKR GRDLAGYQCI SEQGYGGMNS DNIEIRNPAG SRVVGERNVR  720
KKSIRENKTN IARGNYKKSA KEAILKGKMV FQHSVEENVI SMVGSGFFGH PLSGGSNLVR  780
NSSDSENTVT AHLDLNK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166533.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0061s0003.1.p