PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0061s0066.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 238aa    MW: 26136 Da    PI: 8.4779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0061s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11626425
                         ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                          lCr+++r G C+yG+rCkFaH
  Kaladp0061s0066.1.p  6 QLCRYYQR-GSCQYGARCKFAH 26
                         69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.356229IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7427IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQPSKQLCRY YQRGSCQYGA RCKFAHEIEQ PSKPNNSFGF GVQQNPGSVQ QQNNPFGFGV  60
QSGLNSQSQH SRSAQQQPNP FGFGVKGNNP SSKPFDNKWS RVSANPGTGA AASSRKGDGQ  120
SPAATHSCTD PDSCKKQIAE DFEHERPLWK LTCYSHHKYA PCDITGDVSY EELRMSAYDD  180
AKSGMSLPAI VEKERGLLNA KLVEFEALLR NPYKGPHIHP IDLSQGHKTH NVVLEAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021989660.18e-80zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS32e-64C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A251TNT74e-78A0A251TNT7_HELAN; Putative zinc finger, CCCH-type
STRINGevm.model.supercontig_46.1141e-75(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-64C3H family protein