PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0061s0138.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 627aa MW: 72673.1 Da PI: 9.3576

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0061s0138.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.7	1.9e-18	11	101	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHe 88 +f+ e++ ++GF+ r+ +s++s+++g ++ fvC+kegkr+ee++ ++r+raetrt+ + kl +++e gk++v++l+leHnH Kaladp0061s0138.1.p 11 EFWTEFGARTGFTPRRFYSHTSRKDGLLSNAVFVCNKEGKRSEESEL-MMKKRERAETRTSSQVKLGIHREPttFGKYRVYRLHLEHNHV 99 69****************************************999.999***************99889************9 PP FAR1 89 la 90 l Kaladp0061s0138.1.p 100 LH 101 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-14	11	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-28	223	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.297	432	468	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MDFDSVEDAW EFWTEFGART GFTPRRFYSH TSRKDGLLSN AVFVCNKEGK RSEESELMMK 60 KRERAETRTS SQVKLGIHRE PTTFGKYRVY RLHLEHNHVL HTRATVHMMP SQRHITRIQA 120 NEIELADASG IQIKRSHELM SKRSGGVEGT GFIELDHKNF LRTRRQRELR YGDAGSILSY 180 FAQKTKENPF FYYDLQLDNE EQITNIFWAD AKMRIDYGLF GDVASFDTTY STNKESRPFG 240 VFVGLNHHRS TVIFGAAILY DETAASFEWL FQSFLNCHSQ KRPKTIFTDQ DPAMAKAICS 300 VMQGTYHGLC TFHIMLNGIR HLGNLMKGGS SFLTHFQECM YNYSSEEAFE NAWLSMVSKY 360 YVQGNKWLLS IYKIKEKWAS CYMKNVHSLG MRSTQLSESC NAELKRHLKS IIQCDKRVGQ 420 YDLKSFFDGD EATVSFDHVN EVLLCSCKKF EDWGFLCRHA IRVLDLNFIF KIPKKYILLR 480 WTRDVVTHQV KDTNGCDVHE DVHLDVTKRY QHLCPKLVRL ADYAAQSTKG YEFVLSQISE 540 WMKTVEIKSE EHIPNLPTYD AAPPMCYQGK EVKGLAKKVR MNKGGKRLKP WFEKKSNKKV 600 YENKGKQPNN LAKIGYVKHG VSFLAF*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MDFDSVEDAW EFWTEFGART GFTPRRFYSH TSRKDGLLSN AVFVCNKEGK RSEESELMMK  60
KRERAETRTS SQVKLGIHRE PTTFGKYRVY RLHLEHNHVL HTRATVHMMP SQRHITRIQA  120
NEIELADASG IQIKRSHELM SKRSGGVEGT GFIELDHKNF LRTRRQRELR YGDAGSILSY  180
FAQKTKENPF FYYDLQLDNE EQITNIFWAD AKMRIDYGLF GDVASFDTTY STNKESRPFG  240
VFVGLNHHRS TVIFGAAILY DETAASFEWL FQSFLNCHSQ KRPKTIFTDQ DPAMAKAICS  300
VMQGTYHGLC TFHIMLNGIR HLGNLMKGGS SFLTHFQECM YNYSSEEAFE NAWLSMVSKY  360
YVQGNKWLLS IYKIKEKWAS CYMKNVHSLG MRSTQLSESC NAELKRHLKS IIQCDKRVGQ  420
YDLKSFFDGD EATVSFDHVN EVLLCSCKKF EDWGFLCRHA IRVLDLNFIF KIPKKYILLR  480
WTRDVVTHQV KDTNGCDVHE DVHLDVTKRY QHLCPKLVRL ADYAAQSTKG YEFVLSQISE  540
WMKTVEIKSE EHIPNLPTYD AAPPMCYQGK EVKGLAKKVR MNKGGKRLKP WFEKKSNKKV  600
YENKGKQPNN LAKIGYVKHG VSFLAF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874687.1	1e-167	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-72	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0061s0138.1.p