PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0061s0173.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 390aa    MW: 43746.9 Da    PI: 7.6874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0061s0173.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-15143188147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Kaladp0061s0173.1.p 143 RGHWRPAEDAKLKELVAFYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 188
                          899*****************************.***********996 PP
2Myb_DNA-binding53.36.2e-17195238146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r +++++E+e+l  a++ +G++ W+ Iar ++ gRt++++k++w+ 
  Kaladp0061s0173.1.p 195 RRAFSEDEEERLMAAHRAYGNK-WAMIARLFP-GRTDNSVKNHWHV 238
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.223138189IPR017930Myb domain
SMARTSM007179.7E-14142191IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-27143240IPR009057Homeodomain-like
PfamPF002493.8E-15143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-25144196IPR009057Homeodomain-like
CDDcd001677.36E-13146187No hitNo description
PROSITE profilePS5129425.878190244IPR017930Myb domain
SMARTSM007171.7E-13194242IPR001005SANT/Myb domain
PfamPF002491.5E-13195237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-20197243IPR009057Homeodomain-like
CDDcd001671.13E-10197237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MKAMANNKCV IPPGFYADSS FTNGGGVGLI SHYHHHHHHN PSMGLMFQGM GSLSLDLNSS  60
SNPPSAQESL ASKRPDKQME FPASEAGEEN CKGSSDYSDD RVCGSSREFV DLNASLVEDD  120
TETTCHGNNK DAAESGPSKF FTRGHWRPAE DAKLKELVAF YGPQNWNLIA EKLEGRSGKS  180
CRLRWFNQLD PRINRRAFSE DEEERLMAAH RAYGNKWAMI ARLFPGRTDN SVKNHWHVIM  240
ARKYREQSTA YRRRKLSQTI YRKIEDRQNP TPPPPPPCTG FCLPHPAHPF SPNNFAVPAS  300
YNNCNNSVLL HAHHLHQQQQ ISFELMSGSK NRDMMMHMMM FDGPSYTHQN QQQADNNINQ  360
ISPDPLNSSP APPPSQPPLF IDFLGVGAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-321412435107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465930.11e-91PREDICTED: transcription factor MYB108-like
RefseqXP_017618770.11e-91PREDICTED: myb-like protein Q
SwissprotQ9LQX53e-72MY117_ARATH; Transcription factor MYB117
TrEMBLA0A0B0NX301e-90A0A0B0NX30_GOSAR; Transcription factor MYB44-like protein
STRINGGorai.013G086400.15e-91(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.13e-74myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]