PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0059.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 204aa    MW: 23577.6 Da    PI: 9.7437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.8e-1994141148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT eEd +l  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Kaladp0062s0059.1.p  94 RGPWTDEEDRILSSYIANHGEGRWNSLARCAGLNRTGKSCRLRWLNYL 141
                          89********************************************97 PP
2Myb_DNA-binding50.45.2e-16147190146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kaladp0062s0059.1.p 147 RGNISLEEQLLILELHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 190
                          78999*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.59189145IPR017930Myb domain
SuperFamilySSF466895.24E-3192188IPR009057Homeodomain-like
SMARTSM007172.2E-1593143IPR001005SANT/Myb domain
PfamPF002499.4E-1794141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2395148IPR009057Homeodomain-like
CDDcd001675.81E-1296141No hitNo description
SMARTSM007173.3E-14146194IPR001005SANT/Myb domain
PROSITE profilePS5129418.232146196IPR017930Myb domain
PfamPF002497.1E-15147190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22149195IPR009057Homeodomain-like
CDDcd001671.72E-7167190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSHTNQSNTH PSFLLLHLED CLFQLTHIAK SPPNANWPHR VSSSQMNNNH GILMMNGGGG  60
VFSGHSVNSL PSSYKQRQEE PEDDMTTMME DLRRGPWTDE EDRILSSYIA NHGEGRWNSL  120
ARCAGLNRTG KSCRLRWLNY LRPDVRRGNI SLEEQLLILE LHSRWGNRWS KIAKYLPGRT  180
DNEIKNYWRT RVQKHAKQLK CDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-259118824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021978436.13e-73transcription factor MYB108-like
SwissprotQ10MB49e-67MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A251U8877e-72A0A251U887_HELAN; Putative myb protein
STRINGXP_010024826.13e-71(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-61myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]