PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0106.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 166aa    MW: 19425.8 Da    PI: 5.5421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-201566256
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g+++AeIrd       r  +r++lg+f taeeAa+a+++a+ +++g+
  Kaladp0062s0106.1.p 15 KYRGVRRRP-WGKFAAEIRDsH-----RggARVWLGTFNTAEEAARAYDRAAYEMRGA 66
                         8********.**********44.....234**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7361573IPR001471AP2/ERF domain
SMARTSM003801.4E-331579IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-311575IPR001471AP2/ERF domain
CDDcd000184.41E-181574No hitNo description
SuperFamilySSF541712.09E-231574IPR016177DNA-binding domain
PfamPF008474.6E-151565IPR001471AP2/ERF domain
PRINTSPR003671.2E-111627IPR001471AP2/ERF domain
PRINTSPR003671.2E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MRNDDQQQCQ QGGVKYRGVR RRPWGKFAAE IRDSHRGGAR VWLGTFNTAE EAARAYDRAA  60
YEMRGALAIL NFPEEYNIND GGRQQQPQEY NYGWQQHQQQ QQYYTDNYNN NNNSNMHPSS  120
SYSPMHGHGQ GSSEEHHRNR EVIEFEYLDD QLLDDLLDFD QYRGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-3215811480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039174.16e-41PREDICTED: ethylene-responsive transcription factor ERF096
TrEMBLA0A2P5CNM23e-40A0A2P5CNM2_PARAD; AP2/ERF transcription factor
STRINGXP_010039174.12e-40(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.17e-24ERF family protein