PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0180.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18335 Da    PI: 10.0165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0180.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n++ rqvtfskRr g++KKA+EL +LCdae+a+i+fs tgkl+eys+
  Kaladp0062s0180.4.p  9 KKIDNTTARQVTFSKRRRGLFKKAHELATLCDAEIALIVFSATGKLFEYSN 59
                         68***********************************************95 PP
2K-box363e-1377156584
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                          +  ++ + + +  +  +a L ke+++  +e R+l+Ge L+ Lsl+eL+qLe+ Le +l ++ ++K e   ++i+ l++k 
  Kaladp0062s0180.4.p  77 QAADQPSLELQLESSTYAMLSKELSERTNEVRRLKGEHLQGLSLEELKQLEKSLEVGLLRVVETKGEKAEREINALRQKV 156
                          4455666777888889999*******99**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-31385IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002653.74E-39375No hitNo description
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.34186160IPR002487Transcription factor, K-box
PfamPF014865.5E-1089156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVRQKIQIKK IDNTTARQVT FSKRRRGLFK KAHELATLCD AEIALIVFSA TGKLFEYSNS  60
SMRQVIERHS LHNENKQAAD QPSLELQLES STYAMLSKEL SERTNEVRRL KGEHLQGLSL  120
EELKQLEKSL EVGLLRVVET KGEKAEREIN ALRQKVTSEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22174174MEF2C
5f28_B4e-22174174MEF2C
5f28_C4e-22174174MEF2C
5f28_D4e-22174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423753.22e-75MADS-box protein JOINTLESS isoform X2
RefseqXP_006487503.12e-75MADS-box protein JOINTLESS-like isoform X2
RefseqXP_021626292.13e-75MADS-box protein SVP-like isoform X2
RefseqXP_021626294.13e-75MADS-box protein SVP-like isoform X2
SwissprotQ9FUY64e-71JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2H5Q2H62e-74A0A2H5Q2H6_CITUN; Uncharacterized protein (Fragment)
STRINGXP_010254524.11e-73(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]