PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0064s0075.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 285aa    MW: 32722.8 Da    PI: 7.0627
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0064s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35451362102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d+++++++swse+g +fvv+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF+++ F+kg++
  Kaladp0064s0075.1.p  45 FLIKTYQLVDDPTTDRVVSWSEDGATFVVWRPSEFARDLLPNYFKHNNFSSFVRQLNTYGFKKMVADR---------WEFANDFFRKGER 125
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+ks
  Kaladp0064s0075.1.p 126 HLLSEIHRRKS 136
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3735128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-3341134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5741134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAPAMFLSSS EDEKLLQHYN STGFTLDTNI NALDQEQIKS APAPFLIKTY QLVDDPTTDR  60
VVSWSEDGAT FVVWRPSEFA RDLLPNYFKH NNFSSFVRQL NTYGFKKMVA DRWEFANDFF  120
RKGERHLLSE IHRRKSPHQS LQSHQQLYQE QENNHLFQCR SGWPVTDSCS PPLLLPTSSP  180
HLSKPGNDDN CDAVVMMSLS EDNQRLRRKN LMLLSELAHM KSLYNDIIYF IQNNVAPISP  240
PPTEQIPSCQ VKRGVGREEE QNGTVKLFGV SLSGRKRFHQ LDNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A2e-21401342106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A2e-21401342106HEAT-SHOCK TRANSCRIPTION FACTOR
5d5u_B2e-214513429129Heat shock factor protein 1
5d5v_B2e-214513429129Heat shock factor protein 1
5d5v_D2e-214513429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406527.12e-94PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6355e-77HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0L9T8P34e-93A0A0L9T8P3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7V44e-93A0A0S3S7V4_PHAAN; Uncharacterized protein
STRINGGLYMA20G08250.13e-92(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-72heat shock transcription factor B4