PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0064s0151.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 339aa    MW: 36996.3 Da    PI: 8.0847
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0064s0151.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.4e-28168228259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+ gs+fpr+Y+rCt++   +Cp+kk+v+r ++dp+++++tY+++H+++
  Kaladp0064s0151.1.p 168 EDGFTWRKYGQKEILGSRFPRAYFRCTHQklyHCPAKKQVQRLDDDPDTFQVTYRSDHTCH 228
                          7****************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-26163228IPR003657WRKY domain
SuperFamilySSF1182901.23E-24165229IPR003657WRKY domain
SMARTSM007741.0E-35167229IPR003657WRKY domain
PROSITE profilePS5081119.738168230IPR003657WRKY domain
PfamPF031064.6E-25168228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDDAVISMIL RGCELARRLE ASLPSMAVAS LTESCGEIIR AFAAAREKLS GYQQASAFDN  60
REEWLMRSGY GRGIIMDQHV MMQSHDDERD LHVNMEAGQG ASRVPDQPAA VAGPSASRAA  120
VGGSGSFQAG QHVSRSSTSR PRRNERRDGR RTVRVAAPRI GNTEIPPEDG FTWRKYGQKE  180
ILGSRFPRAY FRCTHQKLYH CPAKKQVQRL DDDPDTFQVT YRSDHTCHLS ATAPGPPPNS  240
SLALPPAIIS QQQHSIAPTA SARAAWLSMG IGCGGSRPTS DPRAHSYDGY SYQPVIDMAD  300
TMFNSGSSGT PCMDQIFSSA VEDVEWDQVG DLKGKKHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19168227968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-52WRKY DNA-binding protein 55