PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0065s0023.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 140aa MW: 15356.8 Da PI: 10.3671

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0065s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.1	1.1e-18	21	55	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt kTplWR+gp g+k+LCnaCG+++rk+++ Kaladp0065s0023.1.p 21 CAMCGTAKTPLWRSGPAGPKSLCNACGIKHRKRKS 55 9*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.23E-13	13	65	No hit	No description
PROSITE profile	PS50114	12.07	15	51	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.5E-12	15	67	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-14	19	54	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	2.0E-16	21	55	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.03E-11	21	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MDLSHQQETI MVVDTESKKC CAMCGTAKTP LWRSGPAGPK SLCNACGIKH RKRKSLMCKK 60 ERDKKIRQSD SVTNPAAASA ASTQSSSKWK PRLEKSSSAN LRQSLKDLAP LQRSLRRQRS 120 EEEEAAMLLM LLSCGCVFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6Q751	3e-25	A0A2R6Q751_ACTCH; GATA transcription factor

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	5e-20	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Kaladp0065s0023.1.p