PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0065s0023.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 130aa    MW: 14173.5 Da    PI: 10.6153
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0065s0023.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-181145135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt kTplWR+gp g+k+LCnaCG+++rk+++
  Kaladp0065s0023.2.p 11 CAMCGTAKTPLWRSGPAGPKSLCNACGIKHRKRKS 45
                         9*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-13455No hitNo description
SMARTSM004011.5E-12557IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.07541IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14944IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.56E-111159No hitNo description
PfamPF003201.8E-161145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVVDTESKKC CAMCGTAKTP LWRSGPAGPK SLCNACGIKH RKRKSLMCKK ERDKKIRQSD  60
SVTNPAAASA ASTQSSSKWK PRLEKSSSAN LRQSLKDLAP LQRSLRRQRS EEEEAAMLLM  120
LLSCGCVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482165.17e-25PREDICTED: GATA transcription factor 15-like
RefseqXP_016720854.18e-25PREDICTED: GATA transcription factor 15-like
RefseqXP_017632852.18e-25PREDICTED: GATA transcription factor 15-like
RefseqXP_017632853.18e-25PREDICTED: GATA transcription factor 15-like
TrEMBLA0A2R6Q7513e-25A0A2R6Q751_ACTCH; GATA transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-20GATA transcription factor 15