PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0065s0043.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 78aa    MW: 8841.1 Da    PI: 8.8937
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0065s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB93.22.4e-292761488
                NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                         +rimk vlP+nakisk+ake +qe ++efisfvtse+sdkc++++rkt+ngd+++ al +l f++  e+ + yl 
  Kaladp0065s0043.1.p  2 GRIMKLVLPQNAKISKAAKERMQEYATEFISFVTSETSDKCRKDNRKTVNGDNICRALNHLEFDNLGESPTRYLC 76
                         7****************************************************************9999888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.6E-17259IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.66E-22275IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.4E-28275IPR009072Histone-fold
PRINTSPR006156.0E-72341No hitNo description
PRINTSPR006156.0E-74260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MGRIMKLVLP QNAKISKAAK ERMQEYATEF ISFVTSETSD KCRKDNRKTV NGDNICRALN  60
HLEFDNLGES PTRYLCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-251751387Transcription factor HapC (Eurofung)
4g92_B7e-251751387Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024190877.11e-31nuclear transcription factor Y subunit B-4
SwissprotO822483e-26NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P6R7392e-30A0A2P6R739_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGEMJ088351e-30(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-28nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]